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Categories of resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
Features not validated
Alternative splice form analysis
DNA motif detection
Microbiology
Multiple sequence alignment
Next generation sequencing
Simple lists
Carbohydrates
Gene ID conversion
Lipids
Long non-coding RNA
piRNA
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
Preliminary lists
Antibodies
Biomarkers
Cell lines
Clinical trials
DNA/RNA structures
Disease-gene relationships
Enzymes
Functional analysis
Gene Ontology specific analysis
Gene/protein unified information
Genetics
Genomes and Genomics
Mass spectrometry
Microarray data analysis
Molecular docking
Nomenclature
Organelles
Orthologs
Pharmacokinetics and toxicology
Phylogeny/Taxonomy
Protein domains
Protein localization
Protein-nucleic acid interactions
Secretome
Small molecules
Spectral analysis
Text-mining
Toxicology
Transcription factors and binding sites
Suggested Readings
Basic concepts
Broad reviews
Other reviews
Case studies
Comparison of resources
Intuitive browsing
Multi-level categories
Alphabetical list
Promoter prediction
Case studies
CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
PromH: promoters identification using orthologous genomic sequences
PromoSer: a large-scale mammalian promoter and TSS identification service
Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment
Human pol II promoter prediction: time series descriptors and machine learning
PromoterExplorer: an effective promoter identification method based on the AdaBoost algorithm
EnsemPro: an ensemble approach to predict TSS in human genomic DNA sequences
Promoter prediction and analysis in human, mouse and rat
Promoter prediction for 13,744 genes in humans
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copyright © Dr. Kshitish Acharya K; all rights reserved